{"info": {"biocViews": "Microarray, OneChannel, QualityControl, Preprocessing, StatisticalMethod, DifferentialExpression, Annotation, ReportWriting, Visualization", "Maintainer": "Arthur Li <xueli@coh.org>", "Description": "This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.", "License": "LGPL (>= 2.0)", "Author": "Xiwei Wu, Arthur Li", "Imports": "affy, Biobase, graphics, grDevices, limma, methods, stats, utils, xtable", "Title": "geneChip Analysis Package", "LazyLoad": "yes", "Suggests": "simpleaffy, R2HTML, affydata, affyPLM, genefilter, annaffy, gcrma, hugene10sttranscriptcluster.db", "Depends": "R (>= 2.7.0), affy (>= 1.23.4), Biobase (>= 2.5.5), methods", "Version": "1.37.0", "Collate": "Generic.R designMatrix-class.R contrastMatrix-class.R regressResult-class.R interactionResult-class.R preProcess3prime.R preProcessGeneST.R createExpressionSet.R regress.R selectSigGene.R postInteraction.R selectSigGeneInt.R createGSEAFiles.R createIndex.R createIngenuityFile.R geneFilter.R intensityPlot.R output.cls.R output.gct.R output.ing.R plotCluster.R qa3prime.R qaGeneST.R", "Package": "ArrayTools", "Date": "2009-07-22", "Type": "Package"}, "versions": ["1.37.0"]}