{"info": {"": "", "Title": "Transcript mapping with high-density oligonucleotide tiling arrays", "architecture. The main functionalities of the package are": "1. the class", "Version": "1.55.0", "Collate": "AllClasses.R AllGenerics.R", "zzz.R": "zzz.R", "normalizeByReference.R posMin.R otherStrand.R qcPlots.R": "normalizeByReference.R posMin.R otherStrand.R qcPlots.R", "Description": "The package provides functionality that can be", "as from Affymetrix genechips) for measuring transcript abundance and": "as from Affymetrix genechips) for measuring transcript abundance and", "Author": "Wolfgang Huber, Zhenyu Xu, Joern Toedling with contributions from Matt Ritchie", "using a dynamic programming algorithm that is both fast and exact; 3.": "using a dynamic programming algorithm that is both fast and exact; 3.", "the function 'confint' for calculating confidence intervals using the": "the function 'confint' for calculating confidence intervals using the", "PMindex.R methods-segmentation.R": "PMindex.R methods-segmentation.R", "comparisonPlot.R plotAlongChromLegend.R readCel2eSet.R": "comparisonPlot.R plotAlongChromLegend.R readCel2eSet.R", "'segmentation' for representing partitionings of a linear series of": "'segmentation' for representing partitionings of a linear series of", "pretty plots; 5. the function 'normalizeByReference' for probe-sequence": "pretty plots; 5. the function 'normalizeByReference' for probe-sequence", "biocViews": "Microarray, OneChannel, Preprocessing, Visualization", "License": "Artistic-2.0", "Package": "tilingArray", "confint.segmentation.R plotAlongChrom.R sampleStep.R": "confint.segmentation.R plotAlongChrom.R sampleStep.R", "hybridizations.": "hybridizations.", "dependent response adjustment from a (set of) reference": "dependent response adjustment from a (set of) reference", "Suggests": "", "plotSegmentationDots.R plotSegmentationHeatmap.R": "plotSegmentationDots.R plotSegmentationHeatmap.R", "useful for the analysis of high-density tiling microarray data (such": "useful for the analysis of high-density tiling microarray data (such", "strucchange package; 4. the function 'plotAlongChrom' for generating": "strucchange package; 4. the function 'plotAlongChrom' for generating", "1963-1970 (2006).": "1963-1970 (2006).", "data; 2. the function 'segment' for fitting piecewise constant models": "data; 2. the function 'segment' for fitting piecewise constant models", "Maintainer": "Zhenyu Xu <zxu@embl.de>", "Reference": "Huber W, Toedling J, Steinmetz, L. Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics 22,", "findsegments.R  grid.image.R raster.image.R": "findsegments.R  grid.image.R raster.image.R", "Imports": "strucchange, affy, vsn, genefilter, RColorBrewer, grid, stats4", "Depends": "R (>= 2.11.0), Biobase, methods, pixmap", "LazyLoad": "Yes", "costMatrix.R plotPenLL.R segChrom.R": "costMatrix.R plotPenLL.R segChrom.R"}, "versions": ["1.55.0", "1.54.0", "1.53.0", "1.52.0", "1.51.0", "1.50.0", "1.49.0", "1.48.0", "1.47.1", "1.47.0", "1.46.0", "1.45.0", "1.44.0", "1.43.0", "1.42.0", "1.41.2", "1.41.1", "1.41.0", "1.40.0", "1.39.1", "1.39.0", "1.38.0", "1.37.0", "1.36.0", "1.35.2", "1.35.1", "1.35.0", "1.34.0", "1.33.2", "1.33.1", "1.33.0", "1.32.0", "1.31.0", "1.30.0", "1.29.0", "1.28.0", "1.27.1", "1.27.0", "1.26.0", "1.25.3", "1.25.2", "1.25.1", "1.25.0", "1.24.0", "1.23.5", "1.23.4", "1.23.3", "1.23.2", "1.23.1", "1.23.0", "1.22.0", "1.21.12", "1.21.11", "1.21.10", "1.21.9", "1.21.8", "1.21.7", "1.21.6", "1.21.5", "1.21.4", "1.21.3", "1.21.2", "1.21.1", "1.21.0", "1.20.0", "1.19.2", "1.19.1", "1.19.0", "1.18.0", "1.17.3", "1.17.2", "1.17.1", "1.17.0", "1.16.0", "1.15.3", "1.15.2", "1.15.1", "1.15.0", "1.14.0", "1.13.11", "1.13.10", "1.13.9", "1.13.8", "1.13.7", "1.13.6", "1.13.5", "1.13.4", "1.13.3", "1.13.2", "1.13.1", "1.13.0", "1.11.19", "1.11.18", "1.11.17", "1.11.16", "1.11.15", "1.11.14", "1.11.13", "1.11.12", "1.11.11", "1.11.10", "1.11.9", "1.11.8", "1.11.7", "1.11.6", "1.11.5", "1.11.4", "1.11.3", "1.11.2", "1.11.1", "1.9.1", "1.9.0", "1.8.23", "1.8.22", "1.8.21", "1.8.20", "1.8.19", "1.8.18", "1.8.17", "1.8.16", "1.8.15", "1.8.13", "1.8.12", "1.8.11", "1.8.10", "1.8.9", "1.8.8", "1.8.7", "1.8.6", "1.8.5", "1.8.4", "1.8.3", "1.8.2", "1.8.1", "1.8.0", "1.4.9", "1.4.8", "1.4.7", "1.4.6", "1.4.5", "1.4.4", "1.4.3", "1.4.2", "1.4.1", "1.4.0", "1.3.3", "1.3.2", "1.3.1", "1.3.0", "1.1.11", "1.2.0", "1.1.10", "1.1.9", "1.1.8", "1.1.7", "1.1.6", "1.1.5", "1.1.4", "1.1.3", "1.1.2", "1.1.1", "1.1.0", "1.0.2", "1.0.1", "1.0.0", "0.3.2", "0.3.1", "0.3.0", "0.2.8", "0.2.7", "0.2.6", "0.2.5", "0.2.4", "0.2.3", "0.2.2", "0.2.1", "0.2.0", "0.1.1", "0.1.0"]}